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1

Molecular and Supramolecular Architecture of theSalmo gairdneriProteinaceous Eggshell during Development

Paraskevi Papadopoulou, Vassilis K. Galanopoulos, Stavros J. Hamodrakas

Journal:

Journal of Structural Biology

Year:

1996

Language:

english

File:

PDF, 14.67 MB

english, 1996

2

αCGRP, another amyloidogenic member of the CGRP family

Tsiolaki, Paraskevi L., Nasi, Georgia I., Baltoumas, Fotis A., Louros, Nikolaos N., Magafa, Vassiliki, Hamodrakas, Stavros J., Iconomidou, Vassiliki A.

Journal:

Journal of Structural Biology

Year:

2018

Language:

english

File:

PDF, 1.46 MB

english, 2018

3

Identification of a novel ‘aggregation-prone’/‘amyloidogenic determinant’ peptide in the sequence of the highly amyloidogenic human calcitonin

Iconomidou, Vassiliki A., Leontis, Aristeidis, Hoenger, Andreas, Hamodrakas, Stavros J.

Journal:

Year:

2013

Language:

english

File:

PDF, 764 KB

english, 2013

4

HMMpTM: Improving transmembrane protein topology prediction using phosphorylation and glycosylation site prediction

Tsaousis, Georgios N., Bagos, Pantelis G., Hamodrakas, Stavros J.

Journal:

Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics

Year:

2014

Language:

english

File:

PDF, 402 KB

english, 2014

5

Intrinsic Aggregation Propensity of the CsgB Nucleator Protein is Crucial for Curli Fiber Formation

Louros, Nikolaos N., Bolas, Georgios M.P., Tsiolaki, Paraskevi L., Hamodrakas, Stavros J., Iconomidou, Vassiliki A.

Journal:

Journal of Structural Biology

Year:

2016

Language:

english

File:

PDF, 732 KB

english, 2016

6

Consensus prediction of amyloidogenic determinants in amyloid fibril-forming proteins

Stavros J. Hamodrakas, Christina Liappa, Vassiliki A. Iconomidou

Journal:

International Journal of Biological Macromolecules

Year:

2007

Language:

english

File:

PDF, 107 KB

english, 2007

7

A structural model of the chitin-binding domain of cuticle proteins

Stavros J. Hamodrakas, Judith H. Willis, Vassiliki A. Iconomidou

Journal:

Insect Biochemistry and Molecular Biology

Year:

2002

Language:

english

File:

PDF, 305 KB

english, 2002

8

Conformational analysis of peptide analogues of silkmoth chorion protein segments using CD, NMR and molecular modelling

Dimitra C. Benaki, Dr Emmanuel Mikros, Stavros J. Hamodrakas

Journal:

Journal of Peptide Science

Year:

2004

Language:

english

File:

PDF, 289 KB

english, 2004

9

LepChorionDB, a database of Lepidopteran chorion proteins and a set of tools useful for the identification of chorion proteins in Lepidopteran proteomes

Giannopoulos, Nikolaos G., Michalopoulos, Ioannis, Papandreou, Nikos C., Malatras, Apostolos, Iconomidou, Vassiliki A., Hamodrakas, Stavros J.

Journal:

Insect Biochemistry and Molecular Biology

Year:

2013

Language:

english

File:

PDF, 1.54 MB

english, 2013

10

Cytokine gene polymorphisms in periodontal disease: a meta-analysis of 53 studies including 4178 cases and 4590 controls

Georgios K. Nikolopoulos, Niki L. Dimou, Stavros J. Hamodrakas, Pantelis G. Bagos

Journal:

Journal of Clinical Periodontology

Year:

2008

Language:

english

File:

PDF, 280 KB

english, 2008

11

Haloadaptation: Insights from comparative modeling studies of halophilic archaeal DHFRs

Panagiotis L. Kastritis, Nikos C. Papandreou, Stavros J. Hamodrakas

Journal:

International Journal of Biological Macromolecules

Year:

2007

Language:

english

File:

PDF, 577 KB

english, 2007

12

Amyloids protect the silkmoth oocyte and embryo

Vassiliki A. Iconomidou, Gert Vriend, Stavros J. Hamodrakas

Journal:

Year:

2000

Language:

english

File:

PDF, 405 KB

english, 2000

13

[Part 1: Biological Sciences] || Silkmoth Chorion Multigene Families Constitute a Superfamily: Comparison of C and B Family Sequences

Jerome C. Regier, Fotis C. Kafatos and Stavros J. Hamodrakas

Journal:

Proceedings of the National Academy of Sciences

Year:

1983

Language:

english

File:

PDF, 1.25 MB

english, 1983

14

Comparative genomics of the dairy isolateStreptococcus macedonicusACA-DC 198 against related members of theStreptococcus bovis/Streptococcus equinuscomplex

Papadimitriou, Konstantinos, Anastasiou, Rania, Mavrogonatou, Eleni, Blom, Jochen, Papandreou, Nikos C, Hamodrakas, Stavros J, Ferreira, Stéphanie, Renault, Pierre, Supply, Philip, Pot, Bruno, Tsakali

Journal:

Year:

2014

Language:

english

File:

PDF, 798 KB

english, 2014

15

FT-Raman spectroscopy as diagnostic tool of Congo red binding to amyloids

Vassiliki A. Iconomidou, Georgios D. Chryssikos, Vassilis Gionis, Andreas Hoenger, Stavros J. Hamodrakas

Journal:

Year:

2003

Language:

english

File:

PDF, 172 KB

english, 2003

16

The Crystal Structure of the Complexes of Concanavalin A with 4′-Nitrophenyl-α-d-mannopyranoside and 4′-Nitrophenyl-α-d-glucopyranoside

Panagiotis N. Kanellopoulos, Kyriaki Pavlou, Anastassis Perrakis, Bogos Agianian, Constantin E. Vorgias, Costas Mavrommatis, Maria Soufi, Paul A. Tucker, Stavros J. Hamodrakas

Journal:

Journal of Structural Biology

Year:

1996

Language:

english

File:

PDF, 2.32 MB

english, 1996

17

Chameleon ‘aggregation-prone’ segments of apoA-I: A model of amyloid fibrils formed in apoA-I amyloidosis

Louros, Nikolaos N., Tsiolaki, Paraskevi L., Griffin, Michael D.W., Howlett, Geoffrey J., Hamodrakas, Stavros J., Iconomidou, Vassiliki A.

Journal:

International Journal of Biological Macromolecules

Year:

2015

Language:

english

File:

PDF, 635 KB

english, 2015

18

An amyloidogenic determinant in n-terminal pro-brain natriuretic peptide (nt-probnp): Implications for cardiac amyloidoses

Vassiliki A. Iconomidou, Danae Pheida, Eftihia S. Hamodraka, Claude Antony, Andreas Hoenger, Stavros J. Hamodrakas

Journal:

Year:

2012

Language:

english

File:

PDF, 974 KB

english, 2012

19

Protein aggregation and amyloid fibril formation prediction software from primary sequence: towards controlling the formation of bacterial inclusion bodies

Stavros J. Hamodrakas

Journal:

Year:

2011

Language:

english

File:

PDF, 334 KB

english, 2011

20

Drosophila cuticular proteins with the R&R Consensus: Annotation and classification with a new tool for discriminating RR-1 and RR-2 sequences

Maria V. Karouzou, Yannis Spyropoulos, Vassiliki A. Iconomidou, R.S. Cornman, Stavros J. Hamodrakas, Judith H. Willis

Journal:

Insect Biochemistry and Molecular Biology

Year:

2007

Language:

english

File:

PDF, 191 KB

english, 2007

21

Prothymosin α immunoactive carboxyl-terminal peptide TKKQKTDEDD stimulates lymphocyte reactions, induces dendritic cell maturation and adopts a β-sheet conformation in a sequence-specific manner

Margarita Skopeliti, Vassiliki A. Iconomidou, Evelyna Derhovanessian, Graham Pawelec, Wolfgang Voelter, Hubert Kalbacher, Stavros J. Hamodrakas, Ourania E. Tsitsilonis

Journal:

Molecular Immunology

Year:

2009

Language:

english

File:

PDF, 1006 KB

english, 2009

22

“Soft”-cuticle protein secondary structure as revealed by FT-Raman, ATR FT-IR and CD spectroscopy

Vassiliki A Iconomidou, Georgios D Chryssikos, Vassilis Gionis, Judith H Willis, Stavros J Hamodrakas

Journal:

Insect Biochemistry and Molecular Biology

Year:

2001

Language:

english

File:

PDF, 157 KB

english, 2001

23

Laser-Raman and infrared spectroscopic studies of protein conformation in the eggshell of the fish Salmo gairdneri

Stavros J. Hamodrakas, Efstratios I. Kamitsos, Paraskevi G. Papadopoulou

Journal:

Biochimica et Biophysica Acta (BBA) - Protein Structure and Molecular Enzymology

Year:

1987

Language:

english

File:

PDF, 544 KB

english, 1987

24

Algorithms for incorporating prior topological information in HMMs: application to transmembrane proteins

Pantelis G Bagos, Theodore D Liakopoulos, Stavros J Hamodrakas

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 818 KB

english, 2006

25

An N-terminal pro-atrial natriuretic peptide (NT-proANP) ‘aggregation-prone’ segment involved in isolated atrial amyloidosis

Louros, Nikolaos N., Iconomidou, Vassiliki A., Tsiolaki, Paraskevi L., Chrysina, Evangelia D., Baltatzis, Georgios E., Patsouris, Efstratios S., Hamodrakas, Stavros J.

Journal:

Year:

2014

Language:

english

File:

PDF, 1.20 MB

english, 2014

26

Structural studies of “aggregation-prone” peptide-analogues of teleostean egg chorion ZPB proteins

Louros, Nikolaos N., Petronikolou, Nektaria, Karamanos, Theodoros, Cordopatis, Paul, Iconomidou, Vassiliki A., Hamodrakas, Stavros J.

Journal:

Year:

2014

Language:

english

File:

PDF, 4.84 MB

english, 2014

27

GprotPRED: Annotation of Gα, Gβ and Gγ subunits of G-proteins using profile Hidden Markov Models (pHMMs) and application to proteomes

Kostiou, Vasiliki D., Theodoropoulou, Margarita C., Hamodrakas, Stavros J.

Journal:

Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics

Year:

2016

Language:

english

File:

PDF, 772 KB

english, 2016

28

A Hidden Markov Model method, capable of predicting and discriminating β-barrel outer membrane proteins

Pantelis G Bagos, Theodore D Liakopoulos, Ioannis C Spyropoulos, Stavros J Hamodrakas

Journal:

BMC Bioinformatics

Year:

2004

Language:

english

File:

PDF, 716 KB

english, 2004

29

Erratum to “Drosophila cuticular proteins with the R&R consensus: Annotation and classification with a new tool for discriminating RR-1 and RR-2 sequences” [Insect Biochem. Mol. Biol. 37 (2007) 754–760]

Maria V. Karouzou, Yannis Spyropoulos, Vassiliki A. Iconomidou, R.S. Cornman, Stavros J. Hamodrakas, Judith H. Willis

Journal:

Insect Biochemistry and Molecular Biology

Year:

2008

Language:

english

File:

PDF, 87 KB

english, 2008

30

Laser-Raman and FT-IR spectroscopic studies of peptide-analogues of silkmoth chorion protein segments

Dimitra C Benaki, Amalia Aggeli, Georgios D Chryssikos, Yiagos D Yiannopoulos, Efstratios I Kamitsos, Elizabeth Brumley, Steven T Case, Neville Boden, Stavros J Hamodrakas

Journal:

International Journal of Biological Macromolecules

Year:

1998

Language:

english

File:

PDF, 219 KB

english, 1998

31

PredSL: A Tool for the N-terminal Sequence-based Prediction of Protein Subcellular Localization

Evangelia I. Petsalaki, Pantelis G. Bagos, Zoi I. Litou, Stavros J. Hamodrakas

Journal:

Genomics, Proteomics & Bioinformatics

Year:

2006

Language:

english

File:

PDF, 683 KB

english, 2006

32

Unraveling the aggregation propensity of human insulin C-peptide

Tsiolaki, Paraskevi L., Louros, Nikolaos N., Zompra, Aikaterini A., Hamodrakas, Stavros J., Iconomidou, Vassiliki A.

Journal:

Year:

2016

Language:

english

File:

PDF, 1.67 MB

english, 2016

33

Molecular, crystal and solution structure of a β-cyclodextrin complex with the bromide salt of 2-(3-dimethylaminopropyl)tricyclo[3.3.1.13,7]decan-2-ol, a potent antimicrobial drug

Anastassis Perrakis, Ekaterini Antoniadou-Vyza, Polyxeni Tsitsa, Victor S. Lamzin, Keith S. Wilson, Stavros J. Hamodrakas

Journal:

Carbohydrate Research

Year:

1999

Language:

english

File:

PDF, 461 KB

english, 1999

34

Amyloid-like fibrils from an 18-residue peptide analogue of a part of the central domain of the B-family of silkmoth chorion proteins

Vassiliki A. Iconomidou, Georgios D. Chryssikos, Vassilis Gionis, Gert Vriend, Andreas Hoenger, Stavros J. Hamodrakas

Journal:

Year:

2001

Language:

english

File:

PDF, 1005 KB

english, 2001

35

Interactions of the α-subunits of heterotrimeric G-proteins with GPCRs, effectors and RGS proteins: A critical review and analysis of interacting surfaces, conformational shifts, structural diversity and electrostatic potentials

Baltoumas, Fotis A., Theodoropoulou, Margarita C., Hamodrakas, Stavros J.

Journal:

Journal of Structural Biology

Year:

2013

Language:

english

File:

PDF, 1.34 MB

english, 2013

36

A protein secondary structure prediction scheme for the IBM PC and compatibles

Hamodrakas, Stavros J.

Journal:

Year:

1988

Language:

english

File:

PDF, 359 KB

english, 1988

37

The gram‐negative outer membrane modeler: Automated building of lipopolysaccharide‐rich bacterial outer membranes in four force fields

Baltoumas, Fotis A., Hamodrakas, Stavros J., Iconomidou, Vassiliki A.

Journal:

Journal of Computational Chemistry

Year:

2019

Language:

english

File:

PDF, 2.41 MB

english, 2019

38

Tandemly repeating peptide motifs and their secondary structure in Ceratitis capitata eggshell proteins Ccs36 and Ccs38

Amalia Aggeli, Stavros J. Hamodrakas, Katia Komitopoulou, Mary Konsolaki

Journal:

International Journal of Biological Macromolecules

Year:

1991

Language:

english

File:

PDF, 740 KB

english, 1991

39

Analysis of Molecular Recognition Features (MoRFs) in membrane proteins

Kotta-Loizou, Ioly, Tsaousis, Georgios N., Hamodrakas, Stavros J.

Journal:

Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics

Year:

2013

Language:

english

File:

PDF, 887 KB

english, 2013

40

Prediction of Lipoprotein Signal Peptides in Gram-Positive Bacteria with a Hidden Markov Model

Bagos, Pantelis G., Tsirigos, Konstantinos D., Liakopoulos, Theodore D., Hamodrakas, Stavros J.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 1.70 MB

english, 2008

41

CutProtFam-Pred: Detection and classification of putative structural cuticular proteins from sequence alone, based on profile Hidden Markov Models

Ioannidou, Zoi S., Theodoropoulou, Margarita C., Papandreou, Nikos C., Willis, Judith H., Hamodrakas, Stavros J.

Journal:

Insect Biochemistry and Molecular Biology

Year:

2014

Language:

english

File:

PDF, 671 KB

english, 2014

42

Exploring the ‘aggregation-prone’ core of human Cystatin C: A structural study

Tsiolaki, Paraskevi L., Louros, Nikolaos N., Hamodrakas, Stavros J., Iconomidou, Vassiliki A.

Journal:

Journal of Structural Biology

Year:

2015

Language:

english

File:

PDF, 1.50 MB

english, 2015

43

GeneViTo: Visualizing gene-product functional and structural features in genomic datasets

Georgios S Vernikos, Christos G Gkogkas, Vasilis J Promponas, Stavros J Hamodrakas

Journal:

BMC Bioinformatics

Year:

2003

Language:

english

File:

PDF, 1.21 MB

english, 2003

44

Assembly Characteristics and Structural Motifs in an Aquatic Insect's Biopolymer

Case, Steven T., Wellman, Susan E., Hamodrakas, Stavros

Journal:

MRS Proceedings

Year:

1990

Language:

english

File:

PDF, 300 KB

english, 1990

45

The effect of acute administration of statins on coronary microcirculation during the pre-revascularization period in patients with myocardial infraction

Ioannis A. Paraskevaidis, Efstathios K. Iliodromitis, Ignatios Ikonomidis, Loukianos Rallidis, Eftihia Hamodraka, John Parissis, Aias Andoniadis, Stavros Tzortzis, Maria Anastasiou-Nana

Journal:

Atherosclerosis

Year:

2012

Language:

english

File:

PDF, 150 KB

english, 2012

46

Sixth International Workshop on the Molecular Biology and Genetics of the Lepidoptera

Rebers, John, Heckel, David, Hamodrakas, Stavros

Journal:

Journal of Insect Science

Year:

2003

Language:

english

File:

PDF, 210 KB

english, 2003

47

The GNB3 C825T polymorphism and essential hypertension: a meta-analysis of 34 studies including 14 094 cases and 17 760 controls

Bagos, Pantelis G, Elefsinioti, Antigoni L, Nikolopoulos, Georgios K, Hamodrakas, Stavros J

Journal:

Journal of Hypertension

Year:

2007

Language:

english

File:

PDF, 203 KB

english, 2007

48

Fcγ receptor polymorphisms and their association with periodontal disease: a meta-analysis

Niki L. Dimou, Georgios K. Nikolopoulos, Stavros J. Hamodrakas, Pantelis G. Bagos

Journal:

Journal of Clinical Periodontology

Year:

2010

Language:

english

File:

PDF, 309 KB

english, 2010

49

A method for the prediction of GPCRs coupling specificity to G-proteins using refined profile Hidden Markov Models

Nikolaos G Sgourakis, Pantelis G Bagos, Panagiotis K Papasaikas, Stavros J Hamodrakas

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 491 KB

english, 2005

50

Is β-pleated sheet the molecular conformation which dictates formation of helicoidal cuticle?

Vassiliki A Iconomidou, Judith H Willis, Stavros J Hamodrakas

Journal:

Insect Biochemistry and Molecular Biology

Year:

1999

Language:

english

File:

PDF, 299 KB

english, 1999

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